Forum

Essay writing

2011-09-15T12:43:10+00:00

Essay writing can consist of a number of elements, including: literary criticism, political manifestos, learned arguments, observations of daily life, recollections, and reflections of the author. The definition of an essay is vague, overlapping with those of an article and a short story.

Installing CyteSeer x64 on Windows XP/Vista/7 - 64bit OS.

2009-12-10T21:36:09+00:00

Known Issues when Installing CyteSeer x64 Version on 64bit OS of Windows XP, Vista or 7.

Issue #1: When executing CyteSeer installation file, installation does not begin.
Issue #2: Error when installing into “Program Files” Directory
Issue #3: “Install VM Now” on JInstaller is Greyed Out. Option is not available.

Prior to Installation:

1. Install Java 64 bit directly from Java Website: http://www.java.com/en/download/manual.jsp
- Select the appropriate file for Java (64-bit), download and install. Fully complete installation before executing CyteSeer Installation File.

2. Right �Click� CyteSeer installation file. Select �Run as Administrator�. (Applies to Windows Vista and Windows 7 only)
- This allow CyteSeer installation file to have administrator permissions allowing installation to properly commence and access to the program files directory.

Trouble executing on linux?

2009-09-25T21:11:46+00:00

Just thought I push out a note that linux users may need to chmod +x the CyteSeer bin file to get it to execute.

Kinetic Image Cytometry

2011-01-20T14:28:47+00:00

Quick video introduction to Kinetic Image Cytometry. Stay tuned. There will be more.

problems in opening the program

2010-08-24T02:16:32+00:00

Hi,
I download the software (both the versions 2.7 and 2.0.14) but when I open it, the program doesn’t start…
I verify to have the last version of Java but it’s all right…
Can you please help me??
Thanks

Summary Statistic “Sum” of Mask Area not found…

2010-02-24T21:56:05+00:00

I noticed that the measurment list does not output the Summed (Capital Greek Sigma) mask area in a microtiter well, which also affects total integrated intensity measures. Can a �measure� plug-in be easily adapted to include this ouput, or, a new plug-in be created for this output? This is an important measure in the 3D cell cultures of the differentiation assays conducted here in the lab. It gives us an approximate measure the differentiation efficiency.

Thanks for the help,
PjB

Binary Mask to Labeled Mask to Masking the Gray Image

2010-02-22T23:37:07+00:00

Having some difficulty with simple thresholding and masking in pipeline environment. I create a simple binary mask via one of standard thresholding techniques. Debug mode shows this mask is generated. I then link this mask to a labeled mask, and debug mode shows that this mask is also created. I can apply the labeled mask to a gray image and this ouput is generated in debug mode. The problem is that these masks are not deposited into the results folder. The only mask ouput to the results folder is an archived “labeled mask” in ZIP format. Can you assist me by suggesting a proper course of action which will generate an image mask that can be used as the basis of pixel metrics? Thanks for your help, PjB

Installing CyteSeer on Ubuntu Linux

2010-02-09T01:22:24+00:00

Requirement when Installing CyteSeer on Ubuntu Linux.

Prior to Installation:
1. Install Java 32 or 64 bit from http://java.com/en

2. Install C++ library package “libstdc++5” or “libstdc++.so.5” for Ubuntu. Can use built-in “Synaptic Package Manager” or obtain from
Ubuntu package search site: http://packages.ubuntu.com/

3. Perform chmod a+x on Command Line to set permissions for CyteSeer install bin file before Installation: Example “chmod a+x CyteSeer_2_X_X_linux_i586.bin”

Detailed PDF for Ubuntu Installation available for Download: Click Here to Download Ubuntu Installation PDF

CyteSeer Minimum Requirements

2009-12-06T07:08:38+00:00

Please Reference CyteSeer Requirements for Optimal Operation and Sucessful Installation Here:
http://www.valasciences.com/articles/tutorials/cyteseer-system-requirements/

Installing CyteSeer 2.0.4 in Snow Leopard

2009-10-14T19:11:52+00:00

There is a known issue installing CyteSeer 2.0.4 in Snow Leopard. The work around is as follows:

- You have the change the order of the java virtual machine so that 32-bit is first.
- Utilities—> Java Preferences (bottom window) Java Applications—> drag 32-bit to the top.

There is a graphic attached demonstrating how to do this.